GPSAR Pro 4.18 has a check box for doppler and trap in the speed results view. I had doppler on and trap was only changing a few speeds by a few hundreths, so I had it turned off. Also given the 2sec and 10sec numbers are so close, they may of fixed the 1/2/3 second prob?
GPSresults V6 also has a check box for doppler and interpolation. I didn't add it to the comparison as it wouldn't recognise my alphas or NMs.

Also buggered if I could see where to get total distance from!
My tracks are the extreme for spending lots of time in the water

and the error will get smaller if you are usually above your minspeed and the minspeed is not set too high. So back to Pauls original question, best comparisons / results are usually made if you have
all the data, so I'd recommend having minspeed off for memory card (1 gig card will have stacks of room!). Then if you usually sail for more than 5 hours straight, I'd set minspeed on the data logger to 2 or 3 knots and only use it as a backup to the SBN file. Also you can always filter it later to remove low speeds.