Yes a good example of lateral thinking and continuous improvement to nail all issues in the one project. This is going to turn out really well.
See here a good concise example of the tick stick - this uses a notch as well as the line underneath to give accurate locating - works on any shape hull.
Agree with the semi bulkhead - the red hatched area inboard of it is constricting the interior for no reason - it will not add much strength.
Have 4 suggestions;
1 The point ending of the lower corner of the semi bulkhead gusset will cause a lateral in plane stiffness reduction going into it - will cause a stress concentration at that point ending. Realise the bunk shelf stiffness will assist to reduce the impacts of this but it is better to widen the bulkhead say 50mm at this lower end and add the (say) 50-100mm radius ending to it as per the below photo from one of the links above. Realise you probably won't have the hull bulkhead under the bunk shelf as below but the softer ending will still be well worth it imho. Will use more ply but not much.
See suggestions 2, 3, 4 below.
2 The hardwood spacers under the 2 separate chain plates for caps and lowers - obviously run the grain vertically and epoxy glue them to the bulkhead ply to avoid them splitting. Suggest make them 5mm wider each side than the ss chain plate straps, and then also chamfer them 45deg out so that they don't look too chunky. So if the chain plates are 32mm wide as before, the hardwood would be 102mm wide initially. On the lower edge these hardwood spacers would be finished the same - so 5mm longer and an extra 30mm with 45deg bevel - so total extra length under the ss plate end is 35mm. The 2 mitre corners radiused say r5.
3 Note that in the photos of the other ss22 chain plates there is a short bolt - the rule of thumb is no less than 2 1/2 threads protruding out from the end of the nuts. Obviously this doesn't hold for bolts and nuts under cabin deck heads securing cabin top hand rails - use dome nuts to avoid piercing your head on bolt ends.
4 Put the bolts through from the cap plate chain plate side so that this chain plate bears on the unthreaded shank of the bolts.
All prior comments as relevant - eg ss plate covers over the chain plates, self tapped into the deck and well sealed with suitable adhesive / sealant.