Totally weird, beyond me at the moment, maybe something will occur to me later, but don't hold your breath.
There isn't a delete all button somewhere that's stuck on is there?????
Hmm well here's a thought. I've just remembered a progress line moving across the bottom of the display when you hit save.
Do you see that?
There was also an app that connected to the GT31, and you could download the internal logger with that, (I think it was called Navi link, but probably wouldn't run on anything later than W7
OK wonder of wonder, I have a copy, and just started it in a virtual windows 7. It is called NAVILINK11. You may find a copy on the locosys website, if not PM me and I can email it to you.