Superb boat.
Don't want to get into thread drift but below is another project early 90s diagnosing best engine revs to run a small coastal chem carrier with one prop blade tip damage and associated prop unbalance as well as associated prop water flow issues - 4 blade prop. Able to nurse it for 6 months before next scheduled docking by avoiding revs which excited vertical and lateral hull girder lowest frequency bending modes. A year later did a similar project on a Japanese collier to get it from Sydney to Japan with a whole blade missing - albeit originally 5 blades. It was a slowish trip for them but they got there.
Would expect your shaft to have a high probability of a bend or bow between the cutlass bearing and stern tube. What is the prop damage? If a chunk has been knocked off one of the 3 blades then this will cause similar unbalance and flow issues as in this case. If there is only blade tip bend to one, then lesser unbalance and water flow issues will occur. If blade tip bends to all 3 then this could be the sole course of the vibrations. Am sure you will but would check any damage to the cutlass bearing, p bracket and associated fasteners ("double" p bracket as it goes down to the keel deadwood as well as up to the hull), other.
If you have access to a vibration monitoring kit with spectrum analyser in it prop unbalance will show up at higher magnitudes at 1x prop speed, bent or bowed shafts and associated misalignment at 2x. Blade tip bends if on all blades will show up as higher blade pass frequency component - so number of blades times shaft revs. If only 1 blade tip bent then probably higher 1x.