Hmmm it appears to be related to pitch and diameter.
www.rcgroups.com/forums/showthread.php?730371-Spinning-Prop-vs-Stationary-PropIt's certainly not a clear cut "one size fits all" solution of whether fixed or freewheeling has more drag.
The only explanation I can think of is that if the prop is stopped, then the flow stalls, and you end up with drag based purely on area.
When the blade is spinning, the blade might not be stalled, so might be providing 'lift' on the rear of the blade, pulling you backwards more 'efficiently' than just a flat out stalled blade. You can think of this like a helicopter doing an autorotation. Clearly for a helicopter, a spinning blade has far more drag than a stopped blade.
For boat propellors, which are probably on the other side of the Pitch/Diameter cutoff, it may well end up with less drag if the thing is left to freewheel. The yachting monthly article used a prop with a P/D ratio of 1, which ends up on the side of freewheeling being better.