Before you take anything apart.
Buy some cornwell's white vinegar, not the cheap $1 stuff from woolies, costing around $3 for 750mls
Flush out all the water possible and empty the bottle into the pan, flush down until vinegar is at turn of pan. [do with water supply closed.]
Leave for 24 plus hours. Flush normally.
Now, see if you have any problems, if you have, at least the insides will be clean
